Package index

All functions

getAutoBlockSize() setAutoBlockSize() getAutoBlockLength() getAutoBlockShape() setAutoBlockShape()

Control the geometry of automatic blocks

defaultAutoGrid() rowAutoGrid() colAutoGrid() getAutoGridMaker() setAutoGridMaker() defaultSinkAutoGrid()

Create automatic grids to use for block processing of array-like objects

ConstantArray()

A DelayedArray subclass that contains a constant value

is_noop(<DelayedAbind>) summary(<DelayedAbind>) dim(<DelayedAbind>) dimnames(<DelayedAbind>) extract_array(<DelayedAbind>) is_sparse(<DelayedAbind>) extract_sparse_array(<DelayedAbind>)

DelayedAbind objects

is_noop(<DelayedAperm>) summary(<DelayedAperm>) dim(<DelayedAperm>) dimnames(<DelayedAperm>) extract_array(<DelayedAperm>) is_sparse(<DelayedAperm>) extract_sparse_array(<DelayedAperm>)

DelayedAperm objects

DelayedArray() type()

DelayedArray objects

dnorm(<DelayedArray>) pnorm(<DelayedArray>) qnorm(<DelayedArray>) dbinom(<DelayedArray>) pbinom(<DelayedArray>) qbinom(<DelayedArray>) dpois(<DelayedArray>) ppois(<DelayedArray>) qpois(<DelayedArray>) dlogis(<DelayedArray>) plogis(<DelayedArray>) qlogis(<DelayedArray>)

Statistical functions on DelayedArray objects

DelayedArray-utils arbind,DelayedArray-method acbind,DelayedArray-method rbind cbind rbind,DelayedArray-method cbind,DelayedArray-method bindROWS,DelayedArray-method +,DelayedArray,missing-method -,DelayedArray,missing-method pmax2 pmin2 pmax2,ANY,ANY-method pmin2,ANY,ANY-method pmax2,DelayedArray,vector-method pmax2,DelayedArray,array-method pmin2,DelayedArray,vector-method pmin2,DelayedArray,array-method pmax2,vector,DelayedArray-method pmax2,array,DelayedArray-method pmin2,vector,DelayedArray-method pmin2,array,DelayedArray-method pmax2,DelayedArray,DelayedArray-method pmin2,DelayedArray,DelayedArray-method is.na,DelayedArray-method is.finite,DelayedArray-method is.infinite,DelayedArray-method is.nan,DelayedArray-method !,DelayedArray-method type<-,DelayedArray-method lengths,DelayedArray-method nchar,DelayedArray-method tolower,DelayedArray-method toupper,DelayedArray-method log,DelayedArray-method round,DelayedArray-method signif,DelayedArray-method grepl,ANY,DelayedArray-method sub,ANY,ANY,DelayedArray-method gsub,ANY,ANY,DelayedArray-method anyNA,DelayedArray-method which,DelayedArray-method nzwhich,DelayedArray-method unique unique.DelayedArray unique,DelayedArray-method table table,DelayedArray-method range range.DelayedArray range,DelayedArray-method mean mean.DelayedArray mean,DelayedArray-method apply apply,DelayedArray-method sweep sweep,DelayedArray-method scale scale.DelayedMatrix scale,DelayedMatrix-method paste2 paste2,DelayedArray,vector-method paste2,DelayedArray,array-method paste2,vector,DelayedArray-method paste2,array,DelayedArray-method paste2,DelayedArray,DelayedArray-method

Common operations on DelayedArray objects

DelayedMatrix-mult %*% %*%,DelayedMatrix,ANY-method %*%,ANY,DelayedMatrix-method crossprod crossprod,DelayedMatrix,ANY-method crossprod,ANY,DelayedMatrix-method tcrossprod tcrossprod,DelayedMatrix,ANY-method tcrossprod,ANY,DelayedMatrix-method %*%,DelayedMatrix,DelayedMatrix-method crossprod,DelayedMatrix,DelayedMatrix-method tcrossprod,DelayedMatrix,DelayedMatrix-method crossprod,DelayedMatrix,missing-method tcrossprod,DelayedMatrix,missing-method

DelayedMatrix multiplication and cross-product

DelayedMatrix-rowsum rowsum rowsum.DelayedMatrix rowsum,DelayedMatrix-method colsum colsum,DelayedMatrix-method

rowsum() and colsum() on a DelayedMatrix object

summary(<DelayedNaryIsoOp>) dim(<DelayedNaryIsoOp>) dimnames(<DelayedNaryIsoOp>) extract_array(<DelayedNaryIsoOp>) is_sparse(<DelayedNaryIsoOp>) extract_sparse_array(<DelayedNaryIsoOp>)

DelayedNaryIsoOp objects

is_noop()

DelayedOp objects

is_noop(<DelayedSetDimnames>) summary(<DelayedSetDimnames>) dimnames(<DelayedSetDimnames>)

DelayedSetDimnames objects

is_noop(<DelayedSubassign>) summary(<DelayedSubassign>) extract_array(<DelayedSubassign>) is_sparse(<DelayedSubassign>) extract_sparse_array(<DelayedSubassign>)

DelayedSubassign objects

is_noop(<DelayedSubset>) summary(<DelayedSubset>) dim(<DelayedSubset>) dimnames(<DelayedSubset>) extract_array(<DelayedSubset>) is_sparse(<DelayedSubset>) extract_sparse_array(<DelayedSubset>)

DelayedSubset objects

summary(<DelayedUnaryIsoOpStack>) extract_array(<DelayedUnaryIsoOpStack>) is_sparse(<DelayedUnaryIsoOpStack>) extract_sparse_array(<DelayedUnaryIsoOpStack>)

DelayedUnaryIsoOpStack objects

summary(<DelayedUnaryIsoOpWithArgs>) extract_array(<DelayedUnaryIsoOpWithArgs>) is_sparse(<DelayedUnaryIsoOpWithArgs>) extract_sparse_array(<DelayedUnaryIsoOpWithArgs>)

DelayedUnaryIsoOpWithArgs objects

sinkApply() AutoRealizationSink() getAutoRealizationBackend() setAutoRealizationBackend() registeredRealizationBackends()

RealizationSink objects

RleArray()

RleArray objects

class:RleArraySeed RleArraySeed-class RleArraySeed class:SolidRleArraySeed SolidRleArraySeed-class SolidRleArraySeed class:RleRealizationSink RleRealizationSink-class RleRealizationSink type,RleRealizationSink-method class:ChunkedRleArraySeed ChunkedRleArraySeed-class ChunkedRleArraySeed dim,RleArraySeed-method dimnames,RleArraySeed-method coerce,SolidRleArraySeed,Rle-method coerce,RleRealizationSink,RleList-method coerce,RleRealizationSink,Rle-method extract_array,SolidRleArraySeed-method extract_array,ChunkedRleArraySeed-method coerce,RleRealizationSink,ChunkedRleArraySeed-method coerce,ChunkedRleArraySeed,SolidRleArraySeed-method

RleArraySeed objects

class:SparseArraySeed SparseArraySeed-class SparseArraySeed nzindex nzdata,SparseArraySeed-method dim,SparseArraySeed-method dimnames,SparseArraySeed-method dimnames<-,SparseArraySeed,ANY-method dense2sparse sparse2dense OLD_extract_sparse_array is_sparse,SparseArraySeed-method extract_array,SparseArraySeed-method as.array.SparseArraySeed as.array,SparseArraySeed-method as.matrix.SparseArraySeed as.matrix,SparseArraySeed-method coerce,ANY,SparseArraySeed-method coerce,SparseArraySeed,CsparseMatrix-method coerce,SparseArraySeed,RsparseMatrix-method coerce,SparseArraySeed,sparseMatrix-method coerce,SparseArraySeed,dgCMatrix-method coerce,SparseArraySeed,dgRMatrix-method coerce,SparseArraySeed,lgCMatrix-method coerce,SparseArraySeed,lgRMatrix-method coerce,SparseArraySeed,COO_SparseArray-method coerce,sparseMatrix,SparseArraySeed-method aperm.SparseArraySeed aperm,SparseArraySeed-method

SparseArraySeed objects

SparseArraySeed-utils rbind,SparseArraySeed-method cbind,SparseArraySeed-method is.na,SparseArraySeed-method is.infinite,SparseArraySeed-method is.nan,SparseArraySeed-method tolower,SparseArraySeed-method toupper,SparseArraySeed-method nchar,SparseArraySeed-method anyNA,SparseArraySeed-method which,SparseArraySeed-method max,SparseArraySeed-method min,SparseArraySeed-method range.SparseArraySeed range,SparseArraySeed-method sum,SparseArraySeed-method prod,SparseArraySeed-method any,SparseArraySeed-method all,SparseArraySeed-method mean.SparseArraySeed mean,SparseArraySeed-method

Operate natively on SparseArraySeed objects

blockApply() blockReduce() gridApply() gridReduce() effectiveGrid() currentBlockId() currentViewport() getAutoBPPARAM() setAutoBPPARAM() set_grid_context()

blockApply() and family

makeCappedVolumeBox() makeRegularArrayGridOfCappedLengthViewports()

Utilities to make capped volume boxes

colSums(<DelayedMatrix>) colMeans(<DelayedMatrix>) colMins(<DelayedMatrix>) colMaxs(<DelayedMatrix>) colRanges(<DelayedMatrix>) colVars(<DelayedMatrix>)

DelayedMatrix row/col summarization

realize()

Realize an object in memory or on disk

showtree() nseed() seed() path() seedApply()

Visualize and access the leaves of a tree of delayed operations

simplify() isPristine() contentIsPristine() netSubsetAndAperm()

Simplify a tree of delayed operations