article-journal

HGNChelper: identification and correction of invalid gene symbols for human and mouse

Sehyun Oh, Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis, Markus Riester, Levi Waldron

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Ludwig Geistlinger, Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S LaRue, Christine M Henzler, Sarah A Munro, Claire Daughters, Andrew C Nelson, Boris J Winterhoff, Zenas Chang, Shobhana Talukdar, Mihir Shetty, Sally A Mullany, Martin Morgan, Giovanni Parmigiani, Michael J Birrer, Li-Xuan Qin, Markus Riester, Timothy K Starr, Levi Waldron

Multiomic Integration of Public Oncology Databases in Bioconductor

Marcel Ramos, Ludwig Geistlinger, Sehyun Oh, Lucas Schiffer, Rimsha Azhar, Hanish Kodali, Ino de Bruijn, Jianjiong Gao, Vincent J Carey, Martin Morgan, Levi Waldron

Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale

Vincent J Carey, Marcel Ramos, Benjamin J Stubbs, Shweta Gopaulakrishnan, Sehyun Oh, Nitesh Turaga, Levi Waldron, Martin Morgan

Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data

Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Martin Morgan, Levi Waldron, Markus Riester

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes

Vinicius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian CarcinomaMultiomic Analysis of Subtype Evolution in Ovarian Cancer

L Geistlinger, S Oh, M Ramos, L Schiffer, R S LaRue, others

A longitudinal analysis of albendazole treatment effect on neurocysticercosis cyst evolution using multistate models

Michelle A Montgomery, Marcel Ramos, Elizabeth A Kelvin, Arturo Carpio, Alexander Jaramillo, W Allen Hauser, Hongbin Zhang

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

Lucas Schiffer, Rimsha Azhar, Lori Shepherd, Marcel Ramos, Ludwig Geistlinger, Curtis Huttenhower, Jennifer B Dowd, Nicola Segata, Levi Waldron

Improving Accessibility of the Human Microbiome Project Data Through Integration With R/Bioconductor

Levi Waldron, Lucas Schiffer, Rimsha Azhar, Marcel Ramos, Ludwig Geistlinger, Nicola Segata