Marcel Ramos Pérez

Marcel Ramos Pérez maʁ.sɛl ˈra.mos ˈpe.ɾes

Senior Data Scientist

CUNY Graduate School of Public Health and Health Policy

Biography

Marcel Ramos is a Senior Data Scientist at the Waldron Lab at the CUNY School of Public Health and a Bioconductor Core Team member. His research interests include implementation of genomic data structures and representations within the R / Bioconductor S4 ecosystem. He is involved in the development and maintenance of over 24 R / Bioconductor and CRAN packages including MultiAssayExperiment and BiocManager.

Interests
  • Bioconductor
  • Genomic Software Infrastructure
  • Software Development
  • Reproducible Research
Education

  • MPH in Public Health, 2015

    CUNY Hunter SPH

  • BA in Psychology (French minor), 2010

    CUNY City College

Skills

Technical
R / Bioconductor Packages
Genomic Data Science
Meta programming

Experience

 
 
 
 
 
Senior Data Scientist
Research Foundation CUNY
January 2014 – Present New York, NY
 
 
 
 
 
Lead Biostatistician
Roswell Park Comprehensive Cancer Center
January 2016 – August 2024 Buffalo, NY
 
 
 
 
 
Adjunct Lecturer
CUNY School of Public Health
January 2016 – July 2023 New York, NY

Certificates

Workshop in Online Instruction
Central Michigan University Apr 2019 – May 2019
See certificate
Functional Genomics and Transcriptomics Workshop
El Nodo Nacional de Bioinformatica y la Sociedad Iberoamericana de Bioinformatica Jul 2017 – Jul 2017
See certificate
Additional Certificates
See LinkedIn for more Jan 2017
See certificate

Recent Publications

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Kelly B Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedin C Culhane, Laurent Gatto, Vincent Carey, Martin Morgan, Davide Risso, Levi Waldron (2023). Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol..

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Marcel Ramos, Martin Morgan, Ludwig Geistlinger, Vincent J Carey, Levi Waldron (2023). RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor. Bioinformatics.

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Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N Taroni, Vincent J Carey, Casey S Greene, Levi Waldron, Sean Davis (2022). GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases. Nat. Commun..

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Michael C Schatz, Anthony A Philippakis, Enis Afgan, Eric Banks, Vincent J Carey, Robert J Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L Grossman, Ira M Hall, Kasper D Hansen, Jonathan Lawson, Jeffrey T Leek, Anne O'donnell Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D O'Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet (2022). Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space. Cell Genom.

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Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity Law, Sean Davis, Vincent Carey, Martin Morgan, Ralf Zimmer, Levi Waldron (2021). Toward a gold standard for benchmarking gene set enrichment analysis. Brief. Bioinform..

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